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小鼠中年期和老年期睾丸组织转录组分析
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引用本文:张 涛,杨理凯,路宏朝,王 令,刘 欢,左甜甜.小鼠中年期和老年期睾丸组织转录组分析[J].西北农业学报,2018,27(8):1088~1096
DOI:10.7606/j.issn.1004-1389.2018.08.002
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作者单位
张 涛,杨理凯,路宏朝,王 令,刘 欢,左甜甜 (陕西理工大学 生物科学与工程学院陕西汉中 723001) 
基金项目:陕西理工大学人才启动项目(SLGQD2017-10);陕西省科技厅农业科技创新与攻关(2016NY-084)。
中文摘要:为丰富小鼠睾丸组织转录组研究领域的基础数据,对中年期(180日龄)和老年期(360日龄)小鼠睾丸组织进行转录组测序分析,在中、老年期分别获得 25 187 980 个和 28 840 576 个可用 Reads,比对到参考基因组上的 Reads 分别有 18 861 721 和 22 355 657 个,占总读数的 74.88% 和 77.51%,并检测到中、老年期小鼠睾丸组织中分别有 17 770 和 18 073 个基因表达。以中年期为对照,老年期睾丸组织中下调基因 122 个,上调基因 185 个,其中可清楚注释的基因共285 个。GO 分析发现 285 个差异表达被归纳到生物过程、细胞组分与分子功能 3 个大类的 25 个小类,主要涉及膜、氧化还原过程、转运蛋白活性、生殖发育及衰老等。KEGG 分析发现差异表达基因涉及 139 个信号通路,主要代谢通路为信号转导、脂代谢、碳水化合物代谢、内分泌系统和神经系统等生物学机制。差异表达基因中 RPKM>1 的有 57 个,其所涉及信号通路主要为脂代谢、固醇类激素生成、TNF信号通路、补体系统、胰岛素和溶酶体等。
中文关键词:小鼠  睾丸  转录组  差异表达基因  功能分类
 
Transcriptome Analysis of Mouse Testis Tissue in Middle Age and Old Age
Abstract:We had respectively analyzed mouse testis tissues of middle age (180-day-old) and old age(360-day-old)by transcriptome sequencing technique. The results showed that 25 187 980 and 28 840 576 reads were obtained in the middle age and old age,and 74.88% and 77.51% reads could be compared to the mouse reference genome. In addition,17 770 genes were found in testis from middle age mouse,and 18 073 genes were detected in old age. As the middle age mouse for reference,185 up-regulated genes and 122 down-regulated genes were detected in old age mouse,and 285 genes were annotated. Through GO analysis,a total of 285 genes were divided into 25 function categories,which involved membrane,transporter activity,oxidation-reduction process,extracellular region,reproductive development and aging et al. KEGG analysis showed different expression genes were annotated to 139 single pathways,including Signal transduction,lipid metabolism,Carbohydrate metabolism,Endocrine system and nervous system. In these differentially expressed genes,the RPKM values of 57 differentially expressed genes were greater than 1,and their corresponding signaling pathways included TNF signaling pathway,complement system,insulin and lysosome-related signaling pathways. In summary,the transcriptome analysis of the testis tissue in middle age and old age mouse revealed the differentially expressed genes,which provides the transcriptome information of middle and old age to enrich the transcriptome datas of mouse testis.
keywords:Mouse  Testis  Transcriptome  Differentially expressed genes  Functional classification
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